[133] - cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert
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| Citation | ||
| Böhnert, T., Luebert, F., Ritter, B., Merklinger, F. F., Stoll, A., Schneider, J., Quandt, D., Weigend, M., 2019. cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.26. | ||
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| Identification | ||
| Title(s): | Main Title: cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert | |
| Description(s): | Abstract: The dataset contains material of the historical biogeographic study of the plant genus Cristaria (Malvacae) in the Atacama Desert. We provide here (1) the time calibrated phylogeny of the family Malvaceae in .tre data format (Cristaria_cp_4Foss_BeastTree.tre). Further (2) we provide two nexus files used for all phylogenetic analysis of the paper. The first nexus file (Cristaria_cp_Master.nex) is the concatenated sequence alignment with character set annotations for the three chloroplast marker (trnK/matK, rpl16, ndhF) as well as for hotspot regions and sequence inversions which were excluded and reverse complemented for analysis. The second nexus file (Cristaria_cp_Master_HSEX_INVREV.nex) is identical to the first one except from the fact that all hotspot regions were excluded and the inversions reverse complemented. This dataset was used for all phylogenetic studies as it is presented here. Finally (3), we provide a combined tree file (Cristaria_cp_RAxML-tree_BS_PP.xtg) including the phylogenetic tree of the Maximum Likelihood analysis (RAxML) with additional posterior probability values from the Bayesian Inference analysis (MrBayes). The tree file can be loaded with the program TreeGraph2 (Ströve & Müller (2010) DOI: 10.1186/1471-2105-11-7). The program is freely available here: http://treegraph.bioinfweb.info/. | |
| Identifier(s): | DOI: 10.5880/CRC1211DB.26 | |
| Relation(s): | Is Referenced By: DOI: 10.1016/j.gloplacha.2019.102992, related data type: Text | |
| Citation Advice: | Böhnert, T., Luebert, F., Ritter, B., Merklinger, F.F., Stoll, A., Schneider, J.V., Quandt, D. & Weigend, M. (2019) cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.26 | |
| Responsible Party | ||
| Creator(s): | Author: Tim Böhnert Author: Federico Luebert Author: Benedikt Ritter Author: Felix F. Merklinger Author: Alexandra Stoll Author: Julio Schneider Author: Dietmar Quandt Author: Maximilian Weigend | |
| Funding Reference(s): | Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit | |
| Publisher: | CRC1211 Database (CRC1211DB) | |
| Topic | ||
| CRC1211 Topic: | Biology | |
| Related Sub-project(s): | B1 | |
| Subject(s): | CRC1211 Keywords: Evolution, Biogeography, Arid Zone, Molecular Biology, Phylogeny | |
| File Details | ||
| File Name: | Boehnert_etal_2019_DatingCristaria_GLOPLACHA_SupplFiles.zip | |
| Data Type: | Dataset | |
| File Size: | 263 kB (0.257 MB) | |
| Date(s): | Available: 2019-07-03 | |
| Mime Type: | application/zip | |
| Data Format: | ZIP | |
| Language: | English | |
| Status: | Completed | |
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| Constraints | ||
| Download Permission: | Free | |
| General Access and Use Conditions: | According to the CRC1211DB data policy agreement. | |
| Access Limitations: | According to the CRC1211DB data policy agreement. | |
| Licence: | Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) | |
| Geographic | ||
| North: | -18.04250 | |
| East: | -65.72632 | |
| South: | -38.87481 | |
| West: | -72.66968 | |
| Measurement Region: | Chile | |
| Measurement Location: | --Chile-- | |
| Specific Informations - Data | ||
| Temporal Extent: | 2019/07/03 - 2019/07/03 | |
| Metadata Details | ||
| Metadata Creator: | Tim Böhnert | |
| Metadata Created: | 2019-07-03 | |
| Metadata Last Updated: | 2019-07-24 | |
| Subproject: | B1 | |
| Funding Phase: | 1 | |
| Metadata Language: | English | |
| Metadata Version: | V42 | |
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| Page Visits: | 207 | |
| Metadata Downloads: | 0 | |
| Dataset Downloads: | 1 | |
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