[133] - cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert

All available metadata of the dataset is listed below. Some features are available, e.g. download of dataset or additional description file.

By downloading files from this dataset you accept the license terms of Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0 ) and CRC1211DBData Protection Statement.
Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
VERY IMPORTANT!
Due to the speed of the filesystem and depending on the size of the archive and the file to be extracted, it may take up to thirty (!) minutes until a download is ready! Beware of that when confirming since you may not close the tab because otherwise, you will not get your file!
Features
Citation
Böhnert, T., Luebert, F., Ritter, B., Merklinger, F. F., Stoll, A., Schneider, J., Quandt, D., Weigend, M., 2019. cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.26.
Citation Options
Export as: Select the file format for your download.Citation style: Select the displayed citation style.
Identification
Title(s):Main Title: cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert
Description(s):Abstract: The dataset contains material of the historical biogeographic study of the plant genus Cristaria (Malvacae) in the Atacama Desert. We provide here (1) the time calibrated phylogeny of the family Malvaceae in .tre data format (Cristaria_cp_4Foss_BeastTree.tre). Further (2) we provide two nexus files used for all phylogenetic analysis of the paper. The first nexus file (Cristaria_cp_Master.nex) is the concatenated sequence alignment with character set annotations for the three chloroplast marker (trnK/matK, rpl16, ndhF) as well as for hotspot regions and sequence inversions which were excluded and reverse complemented for analysis. The second nexus file (Cristaria_cp_Master_HSEX_INVREV.nex) is identical to the first one except from the fact that all hotspot regions were excluded and the inversions reverse complemented. This dataset was used for all phylogenetic studies as it is presented here. Finally (3), we provide a combined tree file (Cristaria_cp_RAxML-tree_BS_PP.xtg) including the phylogenetic tree of the Maximum Likelihood analysis (RAxML) with additional posterior probability values from the Bayesian Inference analysis (MrBayes). The tree file can be loaded with the program TreeGraph2 (Ströve & Müller (2010) DOI: 10.1186/1471-2105-11-7). The program is freely available here: http://treegraph.bioinfweb.info/.
Identifier(s):DOI: 10.5880/CRC1211DB.26
Relation(s):Is Referenced By: DOI: 10.1016/j.gloplacha.2019.102992, related data type: Text
Citation Advice:Böhnert, T., Luebert, F., Ritter, B., Merklinger, F.F., Stoll, A., Schneider, J.V., Quandt, D. & Weigend, M. (2019) cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.26
Responsible Party
Creator(s):Author: Tim Böhnert
Author: Federico Luebert
Author: Benedikt Ritter
Author: Felix F. Merklinger
Author: Alexandra Stoll
Author: Julio Schneider
Author: Dietmar Quandt
Author: Maximilian Weigend
Funding Reference(s):Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit
Publisher:CRC1211 Database (CRC1211DB)
Topic
CRC1211 Topic:Biology
Related Sub-project(s):B1
Subject(s):CRC1211 Keywords: Evolution, Biogeography, Arid Zone, Molecular Biology, Phylogeny
File Details
File Name:Boehnert_etal_2019_DatingCristaria_GLOPLACHA_SupplFiles.zip
Data Type:Dataset
File Size:263 kB (0.257 MB)
Date(s):Available: 2019-07-03
Mime Type:application/zip
Data Format:ZIP
Language:English
Status:Completed
File list - click to open:
Please wait until file list is generated, this may take a while - up to fifteen minutes in certain cases, depending of the size of archive!
Constraints
Download Permission:Free
General Access and Use Conditions:According to the CRC1211DB data policy agreement.
Access Limitations:According to the CRC1211DB data policy agreement.
Licence:Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Geographic
North:-18.04250
East:-65.72632
South:-38.87481
West:-72.66968
Measurement Region:Chile
Measurement Location:--Chile--
Specific Informations - Data
Temporal Extent:2019/07/03 - 2019/07/03
Metadata Details
Metadata Creator:Tim Böhnert
Metadata Created:2019-07-03
Metadata Last Updated:2019-07-24
Subproject:B1
Funding Phase:1
Metadata Language:English
Metadata Version:V42
Metadata Export
Metadata Export:
Select the XML download format.
Dataset Metrics
Page Visits:155
Metadata Downloads:0
Dataset Downloads:1
Dataset Activity
Features