cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert
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| Title: | Main Title: cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert |
| Description: | Abstract: The dataset contains material of the historical biogeographic study of the plant genus Cristaria (Malvacae) in the Atacama Desert. We provide here (1) the time calibrated phylogeny of the family Malvaceae in .tre data format (Cristaria_cp_4Foss_BeastTree.tre). Further (2) we provide two nexus files used for all phylogenetic analysis of the paper. The first nexus file (Cristaria_cp_Master.nex) is the concatenated sequence alignment with character set annotations for the three chloroplast marker (trnK/matK, rpl16, ndhF) as well as for hotspot regions and sequence inversions which were excluded and reverse complemented for analysis. The second nexus file (Cristaria_cp_Master_HSEX_INVREV.nex) is identical to the first one except from the fact that all hotspot regions were excluded and the inversions reverse complemented. This dataset was used for all phylogenetic studies as it is presented here. Finally (3), we provide a combined tree file (Cristaria_cp_RAxML-tree_BS_PP.xtg) including the phylogenetic tree of the Maximum Likelihood analysis (RAxML) with additional posterior probability values from the Bayesian Inference analysis (MrBayes). The tree file can be loaded with the program TreeGraph2 (Ströve & Müller (2010) DOI: 10.1186/1471-2105-11-7). The program is freely available here: http://treegraph.bioinfweb.info/. |
| Identifier: | 10.5880/CRC1211DB.26 (DOI) |
| Related Resource: | Is Cited By Text 10.1016/j.gloplacha.2019.102992 (DOI) |
| Citation Advice: | Böhnert, T., Luebert, F., Ritter, B., Merklinger, F.F., Stoll, A., Schneider, J.V., Quandt, D. & Weigend, M. (2019) cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.26 |
Responsible Party
| Creators: | Tim Böhnert (Author), Federico Luebert (Author), Benedikt Ritter (Author), Felix F. Merklinger (Author), Alexandra Stoll (Author), Julio Schneider (Author), Dietmar Quandt (Author), Maximilian Weigend (Author) |
| Funding Reference: | Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit |
| Publisher: | CRC1211 Database (CRC1211DB) |
| Publication Year: | 2019 |
Topic
| CRC1211 Topic: | Biology |
| Related Subproject: | B1 |
| Subjects: | Keywords: Evolution, Biogeography, Arid Zone, Molecular Biology, Phylogeny |
File Details
| Filename: | Boehnert_etal_2019_DatingCristaria_GLOPLACHA_SupplFiles.zip |
| Data Type: | Dataset - Dataset |
| File Size: | 263 KB |
| Date: | Available: 03.07.2019 |
| Mime Type: | application/zip |
| Data Format: | ZIP |
| Language: | English |
| Status: | Completed |
Archive Content
Constraints
| Download Permission: | Free |
| General Access and Use Conditions: | According to the CRC1211DB data policy agreement. |
| Access Limitations: | According to the CRC1211DB data policy agreement. |
| Licence: | [Creative Commons] Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) |
Geographic
Specific Information - Data
| Temporal Extent: | 03.07.2019, 09:51:00 - 09:52:00 |
| Subtype: | Natural Science Data |
Metadata Details
| Metadata Creator: | Tim Böhnert |
| Metadata Created: | 03.07.2019 |
| Metadata Last Updated: | 03.07.2019 |
| Subproject: | B1 |
| Funding Phase: | 1 |
| Metadata Language: | English |
| Metadata Version: | V50 |
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Dataset Statistics
| Page Visits: | 563 |
| Metadata Downloads: | 0 |
| Dataset Downloads: | 4 |
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Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
