[188] - Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii

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Citation
Merklinger, F. F., Zheng, Y., Luebert, F., Harpke, D., Böhnert, T., Stoll, A., Koch, M., Blattner, F. R., Wiehe, T., Quandt, D., 2019. Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.27.
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Identification
Title(s):Main Title: Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii
Description(s):Abstract: This dataset contains the Ipyrad output file in vcf format from a genotyping-by-sequencing (GBS) analysis of 21 populations of Tillandsia landbeckii (307 individuals) from the Atacama Desert between Caldera and Arica. The variant call format (vcf) file is accompanied by a Tillandsia_stats.txt file as part of the output, listing the Ipyrad assembly details. Further, a Tillandsia_GBS_summary.txt file is included with geographic locations of all populations. Sequence reads for the GBS Illumina runs were deposited in the European Nucleotide Archive under the study accession PRJEB35036.
Identifier(s):DOI: 10.5880/CRC1211DB.27
Citation Advice:Merklinger, F.F., Zheng, Y., Luebert, F., Harpke, D., Boehnert, T., Stoll, A., Koch, M.A., Blattner, F.R., Wiehe, T., & Quandt, D.(2019) Genotyping-by-Sequencing output files for Tillandsia landbeckii (Bromeliaceae) population genetic analysis in the Atacama Desert
Responsible Party
Creator(s):Author: Felix F. Merklinger
Author: Yichen Zheng
Author: Federico Luebert
Author: Doerte Harpke
Author: Tim Böhnert
Author: Alexandra Stoll
Author: Marcus Koch
Author: Frank R Blattner
Author: Thomas Wiehe
Author: Dietmar Quandt
Funding Reference(s):Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit
Publisher:CRC1211 Database (CRC1211DB)
Topic
CRC1211 Topic:Biology
Related Sub-project(s):B1, B2, B3
Subject(s):CRC1211 Keywords: Population Genetics, Ecology of Plants, Evolution, Biodiversity
Topic Category:Biota
File Details
File Name:SampleLocations_GBSoutput_Tillandsia.zip
Data Type:Dataset
Size(s):13 Datasets
File Size:12389 kB (12.099 MB)
Date(s):Date Submitted: 2019-10-23
Mime Type:application/zip
Data Format:ZIP
Language:English
Status:Completed
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Download Permission:Free
General Access and Use Conditions:According to the CRC1211DB data policy agreement.
Access Limitations:According to the CRC1211DB data policy agreement.
Licence:CRC1211DB Data policy agreement
Geographic
North:-no map data
East:-
South:-
West:-
Measurement Region:Chile
Measurement Location:--Chile--
Specific Informations - Data
Temporal Extent:2018/10/24 - 2019/10/24
Metadata Details
Metadata Creator:Felix F. Merklinger
Metadata Created:2019-10-24
Metadata Last Updated:2019-10-25
Subproject:B1
Funding Phase:1
Metadata Language:English
Metadata Version:V42
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Dataset Downloads:5
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