Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii

This page lists all metadata that was entered for this dataset. You can download the dataset.

Feature
Citation
Citation Options
Identification
Title:Main Title: Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii
Description:Abstract: This dataset contains the Ipyrad output file in vcf format from a genotyping-by-sequencing (GBS) analysis of 21 populations of Tillandsia landbeckii (307 individuals) from the Atacama Desert between Caldera and Arica. The variant call format (vcf) file is accompanied by a Tillandsia_stats.txt file as part of the output, listing the Ipyrad assembly details. Further, a Tillandsia_GBS_summary.txt file is included with geographic locations of all populations. Sequence reads for the GBS Illumina runs were deposited in the European Nucleotide Archive under the study accession PRJEB35036.
Identifier:10.5880/CRC1211DB.27 (DOI)
Citation Advice:Merklinger, F.F., Zheng, Y., Luebert, F., Harpke, D., Boehnert, T., Stoll, A., Koch, M.A., Blattner, F.R., Wiehe, T., & Quandt, D.(2019) Genotyping-by-Sequencing output files for Tillandsia landbeckii (Bromeliaceae) population genetic analysis in the Atacama Desert
Responsible Party
Creators:Felix F. Merklinger (Author), Yichen Zheng (Author), Federico Luebert (Author), Doerte Harpke (Author), Tim Böhnert (Author), Alexandra Stoll (Author), Marcus Koch (Author), Frank R Blattner (Author), Thomas Wiehe (Author), Dietmar Quandt (Author)
Funding Reference:Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit
Publisher:CRC1211 Database (CRC1211DB)
Publication Year:2019
Topic
CRC1211 Topic:Biology
Related Subprojects:B1, B2, B3
Subjects:Keywords: Population Genetics, Ecology of Plants, Evolution, Biodiversity
Geogr. Information Topic:Biota
File Details
Filename:SampleLocations_GBSoutput_Tillandsia.zip
Data Type:Dataset - Dataset
Size:13 Datasets
File Size:12.1 MB
Date:Submitted: 23.10.2019
Mime Type:application/zip
Data Format:ZIP
Language:English
Status:Completed
Archive Content
Constraints
Download Permission:Free
General Access and Use Conditions:According to the CRC1211DB data policy agreement.
Access Limitations:According to the CRC1211DB data policy agreement.
Licence:[CRC1211DB] Data policy agreement
Geographic
Specific Information - Data
Temporal Extent:24.10.2018, 14:00:00 - 24.10.2019, 14:01:00
Subtype:Natural Science Data
Metadata Details
Metadata Creator:Felix F. Merklinger
Metadata Created:24.10.2019
Metadata Last Updated:24.10.2019
Subproject:B1
Funding Phase:1
Metadata Language:English
Metadata Version:V50
Metadata Export
Metadata Schema:
Dataset Statistics
Page Visits:517
Metadata Downloads:0
Dataset Downloads:6
Dataset Activity
Feature