[188] - Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii

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Merklinger, F. F., Zheng, Y., Luebert, F., Harpke, D., Böhnert, T., Stoll, A., Koch, M., Blattner, F. R., Wiehe, T., Quandt, D., 2019. Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.27.
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Title(s):Main Title: Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii
Description(s):Abstract: This dataset contains the Ipyrad output file in vcf format from a genotyping-by-sequencing (GBS) analysis of 21 populations of Tillandsia landbeckii (307 individuals) from the Atacama Desert between Caldera and Arica. The variant call format (vcf) file is accompanied by a Tillandsia_stats.txt file as part of the output, listing the Ipyrad assembly details. Further, a Tillandsia_GBS_summary.txt file is included with geographic locations of all populations. Sequence reads for the GBS Illumina runs were deposited in the European Nucleotide Archive under the study accession PRJEB35036.
Identifier(s):DOI: 10.5880/CRC1211DB.27
Citation Advice:Merklinger, F.F., Zheng, Y., Luebert, F., Harpke, D., Boehnert, T., Stoll, A., Koch, M.A., Blattner, F.R., Wiehe, T., & Quandt, D.(2019) Genotyping-by-Sequencing output files for Tillandsia landbeckii (Bromeliaceae) population genetic analysis in the Atacama Desert
Responsible Party
Creator(s):Author: Felix F. Merklinger
Author: Yichen Zheng
Author: Federico Luebert
Author: Doerte Harpke
Author: Tim Böhnert
Author: Alexandra Stoll
Author: Marcus Koch
Author: Frank R Blattner
Author: Thomas Wiehe
Author: Dietmar Quandt
Funding Reference(s):Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit
Publisher:CRC1211 Database (CRC1211DB)
CRC1211 Topic:Biology
Related Sub-project(s):B1, B2, B3
Subject(s):CRC1211 Keywords: Population Genetics, Ecology of Plants, Evolution, Biodiversity
Topic Category:Biota
File Details
File Name:SampleLocations_GBSoutput_Tillandsia.zip
Data Type:Dataset
Size(s):13 Datasets
File Size:12389 kB (12.099 MB)
Date(s):Date Submitted: 2019-10-23
Mime Type:application/zip
Data Format:ZIP
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Download Permission:Free
General Access and Use Conditions:According to the CRC1211DB data policy agreement.
Access Limitations:According to the CRC1211DB data policy agreement.
Licence:CRC1211DB Data policy agreement
North:-no map data
Measurement Region:Chile
Measurement Location:--Chile--
Specific Informations - Data
Temporal Extent:2018/10/24 - 2019/10/24
Metadata Details
Metadata Creator:Felix F. Merklinger
Metadata Created:2019-10-24
Metadata Last Updated:2019-10-25
Funding Phase:1
Metadata Language:English
Metadata Version:V42
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