Database of genes and trees used for the manuscript "How many cows are in the desert? Molecular phylogeny and species delimitation of the genus Gyriosomus (Coleoptera: Tenebrionidae) from the Atacama Desert "
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Citation
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Identification
| Title: | Main Title: Database of genes and trees used for the manuscript "How many cows are in the desert? Molecular phylogeny and species delimitation of the genus Gyriosomus (Coleoptera: Tenebrionidae) from the Atacama Desert " |
| Description: | Table Of Contents: The file contains: The file contains: 0) The CRC1211DB data policy 1) Genes matrix of Gyriosomus used for the Bayesian phylogenetic analyses. This dataset is in NEXUS format with a combined matrix of four genes concatenated (COI, 28S, CAD and Wg) and the respective outgroups. This file also contains the MrBayes Block with the partition scheme, substitution models and analysis settings. 2) Bayesian phylogenetic tree based on the concatenated genes matrix in NEWICK format. 3) Concatenated gene matrix in FASTA format used for the Maximum Likelihood analysis. 4) Gene partition scheme used for the Maximum Likelihood analysis. 5) Maximum Likelihood phylogenetic tree based on concatenated genes matrix in NEWICK format. 6) COI matrix in NEXUS format used to obtain the Bayesian tree for the PTP-based delimitation analyses. 7) Bayesian phylogenetic tree based on COI in NEWICK format. 8) Maximum Likelihood phylogenetic tree based on COI in NEWICK format. 9) Ultrametric Bayesian tree based on the Birth-Death model for the COI gene in NEWICK format. 10) BEAUTi settings for the Ultrametric Bayesian tree based on the Birth-Death model for the COI gene. 11) BEAUTi settings for the Ultrametric Bayesian tree based on the Yule process model for the COI gene. 12) A short instruction. |
Responsible Party
| Creators: | Simón Anguita-Salinas (Author), Alvaro Zúñiga-Reinoso (Author) |
| Publisher: | CRC1211 Database (CRC1211DB) |
| Publication Year: | 2025 |
Topic
| CRC1211 Topic: | Biology |
| Related Subproject: | B2 |
| Subjects: | Keywords: Biodiversity, Biogeography, Arid Zone |
| Geogr. Information Topic: | Biota |
File Details
| Filename: | Database_Gyriosomus_Phylogeny.rar |
| Data Type: | Dataset - Dataset |
| File Size: | 89 KB |
| Date: | Created: 25.08.2025 |
| Mime Type: | application/x-rar-compressed |
| Data Format: | ZIP |
| Language: | English |
| Status: | Completed |
Constraints
| Download Permission: | Free |
| Download Information: | This data is protected according to the CRC1211DB data policy agreement. |
| General Access and Use Conditions: | According to the CRC1211DB data policy agreement. |
| Access Limitations: | According to the CRC1211DB data policy agreement. |
| Licence: | [CRC1211DB] Data policy agreement |
Geographic
Specific Information - Data
| Temporal Extent: | 25.08.2025, 23:18:00 - 02.06.2028, 11:18:00 |
| Subtype: | Natural Science Data |
Metadata Details
| Metadata Creator: | Alvaro Zúñiga |
| Metadata Created: | 29.08.2025 |
| Metadata Last Updated: | 29.08.2025 |
| Subproject: | B2 |
| Funding Phase: | 2 |
| Metadata Language: | English |
| Metadata Version: | V50 |
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Dataset Statistics
| Page Visits: | 49 |
| Metadata Downloads: | 0 |
| Dataset Downloads: | 2 |
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By downloading this dataset you accept the license terms of [CRC1211DB] Data policy agreement and CRC1211DB Data Protection Statement
Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
