cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert

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Title:Main Title: cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert
Description:Abstract: The dataset contains material of the historical biogeographic study of the plant genus Cristaria (Malvacae) in the Atacama Desert. We provide here (1) the time calibrated phylogeny of the family Malvaceae in .tre data format (Cristaria_cp_4Foss_BeastTree.tre). Further (2) we provide two nexus files used for all phylogenetic analysis of the paper. The first nexus file (Cristaria_cp_Master.nex) is the concatenated sequence alignment with character set annotations for the three chloroplast marker (trnK/matK, rpl16, ndhF) as well as for hotspot regions and sequence inversions which were excluded and reverse complemented for analysis. The second nexus file (Cristaria_cp_Master_HSEX_INVREV.nex) is identical to the first one except from the fact that all hotspot regions were excluded and the inversions reverse complemented. This dataset was used for all phylogenetic studies as it is presented here. Finally (3), we provide a combined tree file (Cristaria_cp_RAxML-tree_BS_PP.xtg) including the phylogenetic tree of the Maximum Likelihood analysis (RAxML) with additional posterior probability values from the Bayesian Inference analysis (MrBayes). The tree file can be loaded with the program TreeGraph2 (Ströve & Müller (2010) DOI: 10.1186/1471-2105-11-7). The program is freely available here: http://treegraph.bioinfweb.info/.
Identifier:10.5880/CRC1211DB.26 (DOI)
Related Resource:Is Cited By Text 10.1016/j.gloplacha.2019.102992 (DOI)
Citation Advice:Böhnert, T., Luebert, F., Ritter, B., Merklinger, F.F., Stoll, A., Schneider, J.V., Quandt, D. & Weigend, M. (2019) cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert. CRC1211 Database (CRC1211DB). DOI: 10.5880/CRC1211DB.26
Responsible Party
Creators:Tim Böhnert (Author), Federico Luebert (Author), Benedikt Ritter (Author), Felix F. Merklinger (Author), Alexandra Stoll (Author), Julio Schneider (Author), Dietmar Quandt (Author), Maximilian Weigend (Author)
Funding Reference:Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit
Publisher:CRC1211 Database (CRC1211DB)
Publication Year:2019
Topic
CRC1211 Topic:Biology
Related Subproject:B1
Subjects:Keywords: Evolution, Biogeography, Arid Zone, Molecular Biology, Phylogeny
File Details
Filename:Boehnert_etal_2019_DatingCristaria_GLOPLACHA_SupplFiles.zip
Data Type:Dataset - Dataset
File Size:263 KB
Date:Available: 03.07.2019
Mime Type:application/zip
Data Format:ZIP
Language:English
Status:Completed
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Download Permission:Free
General Access and Use Conditions:According to the CRC1211DB data policy agreement.
Access Limitations:According to the CRC1211DB data policy agreement.
Licence:[Creative Commons] Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
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Temporal Extent:03.07.2019, 09:51:00 - 09:52:00
Subtype:Natural Science Data
Metadata Details
Metadata Creator:Tim Böhnert
Metadata Created:03.07.2019
Metadata Last Updated:03.07.2019
Subproject:B1
Funding Phase:1
Metadata Language:English
Metadata Version:V50
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