cpDNA alignments and R-skript for Historical Biogeography of Zygophyllaceae in the Atacama Desert

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Title:Main Title: cpDNA alignments and R-skript for Historical Biogeography of Zygophyllaceae in the Atacama Desert
Description:Abstract: The dataset contains sequence information of the historical biogeographic study of the plant family Zygophyllaceae in the Atacama Desert. We provide three nexus files containing chloroplast sequence data used for all phylogenetic divergence time estimation analysis of the paper. The first nexus file (Zygophyllales_CP_Master.nex) contains the concatenated sequence alignment with character set annotations for the three-chloroplast marker (rbcL, trnL-trnF, trnS-trnG) as well as for hotspot regions and sequence inversions which were excluded and reverse complemented for analysis. The second nexus file (Zygophyllales_CP_Master_HSEX_INVREV_BEAST.nex) is identical to the first one except from the fact that all hotspot regions were excluded and the inversions reverse complemented. This dataset was used for the dating analyses. The third nexus file (Zygophyllales_CP_Master_HSEX_INVREV_RAxML.nex) was used for the phylogenetic reconstruction using a Maximum Likelihood approach. Finally, we provide the R-skript used to plot the time calibrated trees and the ancestral area reconstruction.
Identifier:10.5880/CRC1211DB.32 (DOI)
Responsible Party
Creators:Tim Böhnert (Author), Maximilian Weigend (Author), Felix F. Merklinger (Author), Dietmar Quandt (Author), Federico Luebert (Author)
Funding Reference:Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit
Publisher:CRC1211 Database (CRC1211DB)
Publication Year:2019
Topic
CRC1211 Topic:Biology
Related Subproject:B1
Subjects:Keywords: Biogeography, Arid Zone, Molecular Biology, Phylogeny, Evolution
File Details
Filename:Boehnert_etal_Zygo_SuppMaterial.zip
Data Type:Dataset - Dataset
File Size:73 KB
Date:Created: 04.11.2019
Mime Type:application/zip
Data Format:ZIP
Language:English
Status:Completed
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Download Permission:Free
General Access and Use Conditions:According to the CRC1211DB data policy agreement.
Access Limitations:According to the CRC1211DB data policy agreement.
Licence:[Creative Commons] Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Geographic
Specific Information - Data
Temporal Extent:03.07.2019, 09:51:00 - 02.12.2019, 09:52:00
Subtype:Natural Science Data
Metadata Details
Metadata Creator:Tim Böhnert
Metadata Created:12.12.2019
Metadata Last Updated:12.12.2019
Subproject:B1
Funding Phase:1
Metadata Language:English
Metadata Version:V50
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Dataset Downloads:16
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