Heger P, Ragionieri L, Predel R and Wiehe T. Rapid evolution of novel genes in a desert-colonizing beetle lineage (Coleoptera: Tenebrionidae). Intermediate Data Files 1-7
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| Title: | Main Title: Heger P, Ragionieri L, Predel R and Wiehe T. Rapid evolution of novel genes in a desert-colonizing beetle lineage (Coleoptera: Tenebrionidae). Intermediate Data Files 1-7 |
| Description: | Abstract: This large zip file (2.9GB) contains 7 intermediate data files of the orthology clustering steps as described in the manuscript "Rapid evolution of novel genes in a desert-colonizing beetle lineage (Coleoptera: Tenebrionidae)" (for workflow, see Fig. 3 of manuscript). Each of the seven files is itself compressed with bzip2 (inflate with bunzip2) and will inflate to considerable size. Please check the following table for disk space requirements of the uncompressed (inflated) files: md5sum bz2-size uncompressed-size filename fdbb44126aa7a217f0237905ea669851 961M 2.9G all100_beetle_TSAs.fasta.bz2 e1f3e1e89c777d19a59a306067b95f6c 159M 4.0G coorthologs.txt.bz2 2cdd47c60b24edd6c3eb85d400c99892 46M 485M groups1.3.7.txt.bz2 d065b41d8c086823b9dfd01d96973064 6.3M 75M groups1.3.7.txt_teneb.bz2 6c3266f06d952f0f4d02ecfe0bb71d29 168M 3.2G inparalogs.txt.bz2 3c96e46119254f3f7588f81ba6049403 874M 15G mclInput.bz2 08234859d5a0c5b874b10f395322d318 639M 9.8G orthologs.txt.bz2 File "all100_beetle_TSAs.fasta.bz2" contains 17.4 million protein sequences of 88 beetle species used as starting point for orthology clustering (plain text in fasta format). File "coorthologs.txt.bz2" is one of three homology tables from which the MCL input file is built. It contains co-orthology information of the beetle dataset (table in plain text format). File "orthologs.txt.bz2" is the second of three homology tables from which the MCL input file is built. It contains orthology information of the beetle dataset (table in plain text format). File "inparalogs.txt.bz2" is the third of three homology tables from which the MCL input file is built. It contains in-paralogy information of the beetle dataset (table in plain text format). File "mclInput.bz2" is the MCL input file used for generating clusters of orthologous sequences during the MCL (Markov clustering) process (table in plain text format). File "groups1.3.7.txt.bz2" is the slightly modified output file of the Markov clustering process. It contains the clusters of orthologous protein sequences (plain text file). File "groups1.3.7.txt_teneb.bz2" is another version of the previous file which we used to obtain tenebrionid-specific orthogroups (plain text file). |
| Related Resource: | Is Source Of https://www.crc1211db.uni-koeln.de/data.php?dataID=365 (URL) |
Responsible Party
| Creator: | Peter Heger (Author) |
| Contributors: | Lapo Ragionieri (Researcher), Reinhard Predel (Project Leader), Thomas Wiehe (Project Leader) |
| Publisher: | CRC1211 Database (CRC1211DB) |
| Publication Year: | 2020 |
Topic
| CRC1211 Topic: | Biology |
| Related Subproject: | B3 |
| Subjects: | Keywords: Evolution, Insects, Biodiversity |
| Geogr. Information Topic: | Biota |
File Details
| Filename: | Intermediate_Data_Files_Heger_et_al_Rapid_evolution_novel_genes_in_desert_colonizing_beetle_lineage.zip |
| Data Type: | Dataset - Dataset |
| File Size: | 2.8 GB |
| Date: | Submitted: 05.02.2020 |
| Mime Type: | application/zip |
| Data Format: | ASCII |
| Language: | English |
| Status: | In Process |
Constraints
| Download Permission: | Only Project Members |
| General Access and Use Conditions: | According to the CRC1211DB data policy agreement. |
| Access Limitations: | According to the CRC1211DB data policy agreement. |
| Licence: | [Creative Commons] Attribution 4.0 International (CC BY 4.0) |
Geographic
Specific Information - Data
| Temporal Extent: | 20.02.2020, 11:41:00 - 27.02.2020, 11:41:00 |
| Subtype: | Natural Science Data |
Metadata Details
| Metadata Creator: | Peter Heger |
| Metadata Created: | 07.02.2020 |
| Metadata Last Updated: | 07.02.2020 |
| Subproject: | B3 |
| Funding Phase: | 1 |
| Metadata Language: | English |
| Metadata Version: | V50 |
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| Page Visits: | 248 |
| Metadata Downloads: | 0 |
| Dataset Downloads: | 0 |
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