Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii
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Citation
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Identification
| Title: | Main Title: Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii |
| Description: | Abstract: This dataset contains the Ipyrad output file in vcf format from a genotyping-by-sequencing (GBS) analysis of 21 populations of Tillandsia landbeckii (307 individuals) from the Atacama Desert between Caldera and Arica. The variant call format (vcf) file is accompanied by a Tillandsia_stats.txt file as part of the output, listing the Ipyrad assembly details. Further, a Tillandsia_GBS_summary.txt file is included with geographic locations of all populations. Sequence reads for the GBS Illumina runs were deposited in the European Nucleotide Archive under the study accession PRJEB35036. |
| Identifier: | 10.5880/CRC1211DB.27 (DOI) |
| Citation Advice: | Merklinger, F.F., Zheng, Y., Luebert, F., Harpke, D., Boehnert, T., Stoll, A., Koch, M.A., Blattner, F.R., Wiehe, T., & Quandt, D.(2019) Genotyping-by-Sequencing output files for Tillandsia landbeckii (Bromeliaceae) population genetic analysis in the Atacama Desert |
Responsible Party
| Creators: | Felix F. Merklinger (Author), Yichen Zheng (Author), Federico Luebert (Author), Doerte Harpke (Author), Tim Böhnert (Author), Alexandra Stoll (Author), Marcus Koch (Author), Frank R Blattner (Author), Thomas Wiehe (Author), Dietmar Quandt (Author) |
| Funding Reference: | Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit |
| Publisher: | CRC1211 Database (CRC1211DB) |
| Publication Year: | 2019 |
Topic
| CRC1211 Topic: | Biology |
| Related Subprojects: | B1, B2, B3 |
| Subjects: | Keywords: Population Genetics, Ecology of Plants, Evolution, Biodiversity |
| Geogr. Information Topic: | Biota |
File Details
| Filename: | SampleLocations_GBSoutput_Tillandsia.zip |
| Data Type: | Dataset - Dataset |
| Size: | 13 Datasets |
| File Size: | 12.1 MB |
| Date: | Submitted: 23.10.2019 |
| Mime Type: | application/zip |
| Data Format: | ZIP |
| Language: | English |
| Status: | Completed |
Archive Content
Constraints
| Download Permission: | Free |
| General Access and Use Conditions: | According to the CRC1211DB data policy agreement. |
| Access Limitations: | According to the CRC1211DB data policy agreement. |
| Licence: | [CRC1211DB] Data policy agreement |
Geographic
Specific Information - Data
| Temporal Extent: | 24.10.2018, 14:00:00 - 24.10.2019, 14:01:00 |
| Subtype: | Natural Science Data |
Metadata Details
| Metadata Creator: | Felix F. Merklinger |
| Metadata Created: | 24.10.2019 |
| Metadata Last Updated: | 24.10.2019 |
| Subproject: | B1 |
| Funding Phase: | 1 |
| Metadata Language: | English |
| Metadata Version: | V50 |
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Dataset Statistics
| Page Visits: | 794 |
| Metadata Downloads: | 0 |
| Dataset Downloads: | 7 |
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Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
