Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii
This page lists all metadata that was entered for this dataset. You can download the dataset.
Feature
Citation
Citation Options
Identification
Title: | Main Title: Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii |
Description: | Abstract: This dataset contains the Ipyrad output file in vcf format from a genotyping-by-sequencing (GBS) analysis of 21 populations of Tillandsia landbeckii (307 individuals) from the Atacama Desert between Caldera and Arica. The variant call format (vcf) file is accompanied by a Tillandsia_stats.txt file as part of the output, listing the Ipyrad assembly details. Further, a Tillandsia_GBS_summary.txt file is included with geographic locations of all populations. Sequence reads for the GBS Illumina runs were deposited in the European Nucleotide Archive under the study accession PRJEB35036. |
Identifier: | 10.5880/CRC1211DB.27 (DOI) |
Citation Advice: | Merklinger, F.F., Zheng, Y., Luebert, F., Harpke, D., Boehnert, T., Stoll, A., Koch, M.A., Blattner, F.R., Wiehe, T., & Quandt, D.(2019) Genotyping-by-Sequencing output files for Tillandsia landbeckii (Bromeliaceae) population genetic analysis in the Atacama Desert |
Responsible Party
Creators: | Felix F. Merklinger (Author), Yichen Zheng (Author), Federico Luebert (Author), Doerte Harpke (Author), Tim Böhnert (Author), Alexandra Stoll (Author), Marcus Koch (Author), Frank R Blattner (Author), Thomas Wiehe (Author), Dietmar Quandt (Author) |
Funding Reference: | Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit |
Publisher: | CRC1211 Database (CRC1211DB) |
Publication Year: | 2019 |
Topic
CRC1211 Topic: | Biology |
Related Subprojects: | B1, B2, B3 |
Subjects: | Keywords: Population Genetics, Ecology of Plants, Evolution, Biodiversity |
Geogr. Information Topic: | Biota |
File Details
Filename: | SampleLocations_GBSoutput_Tillandsia.zip |
Data Type: | Dataset - Dataset |
Size: | 13 Datasets |
File Size: | 12.1 MB |
Date: | Submitted: 23.10.2019 |
Mime Type: | application/zip |
Data Format: | ZIP |
Language: | English |
Status: | Completed |
Archive Content
Constraints
Download Permission: | Free |
General Access and Use Conditions: | According to the CRC1211DB data policy agreement. |
Access Limitations: | According to the CRC1211DB data policy agreement. |
Licence: | [CRC1211DB] Data policy agreement |
Geographic
Specific Information - Data
Temporal Extent: | 24.10.2018, 14:00:00 - 24.10.2019, 14:01:00 |
Subtype: | Natural Science Data |
Metadata Details
Metadata Creator: | Felix F. Merklinger |
Metadata Created: | 24.10.2019 |
Metadata Last Updated: | 24.10.2019 |
Subproject: | B1 |
Funding Phase: | 1 |
Metadata Language: | English |
Metadata Version: | V50 |
Metadata Export
Metadata Schema: |
Dataset Statistics
Page Visits: | 630 |
Metadata Downloads: | 0 |
Dataset Downloads: | 6 |
Dataset Activity
Feature
By downloading this dataset you accept the license terms of [CRC1211DB] Data policy agreement and CRC1211DB Data Protection Statement
Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.