Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii

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Title:Main Title: Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii
Description:Abstract: This dataset contains the Ipyrad output file in vcf format from a genotyping-by-sequencing (GBS) analysis of 21 populations of Tillandsia landbeckii (307 individuals) from the Atacama Desert between Caldera and Arica. The variant call format (vcf) file is accompanied by a Tillandsia_stats.txt file as part of the output, listing the Ipyrad assembly details. Further, a Tillandsia_GBS_summary.txt file is included with geographic locations of all populations. Sequence reads for the GBS Illumina runs were deposited in the European Nucleotide Archive under the study accession PRJEB35036.
Identifier:10.5880/CRC1211DB.27 (DOI)
Citation Advice:Merklinger, F.F., Zheng, Y., Luebert, F., Harpke, D., Boehnert, T., Stoll, A., Koch, M.A., Blattner, F.R., Wiehe, T., & Quandt, D.(2019) Genotyping-by-Sequencing output files for Tillandsia landbeckii (Bromeliaceae) population genetic analysis in the Atacama Desert
Responsible Party
Creators:Felix F. Merklinger (Author), Yichen Zheng (Author), Federico Luebert (Author), Doerte Harpke (Author), Tim Böhnert (Author), Alexandra Stoll (Author), Marcus Koch (Author), Frank R Blattner (Author), Thomas Wiehe (Author), Dietmar Quandt (Author)
Funding Reference:Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit
Publisher:CRC1211 Database (CRC1211DB)
Publication Year:2019
Topic
CRC1211 Topic:Biology
Related Subprojects:B1, B2, B3
Subjects:Keywords: Population Genetics, Ecology of Plants, Evolution, Biodiversity
Geogr. Information Topic:Biota
File Details
Filename:SampleLocations_GBSoutput_Tillandsia.zip
Data Type:Dataset - Dataset
Size:13 Datasets
File Size:12.1 MB
Date:Submitted: 23.10.2019
Mime Type:application/zip
Data Format:ZIP
Language:English
Status:Completed
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Download Permission:Free
General Access and Use Conditions:According to the CRC1211DB data policy agreement.
Access Limitations:According to the CRC1211DB data policy agreement.
Licence:[CRC1211DB] Data policy agreement
Geographic
Specific Information - Data
Temporal Extent:24.10.2018, 14:00:00 - 24.10.2019, 14:01:00
Subtype:Natural Science Data
Metadata Details
Metadata Creator:Felix F. Merklinger
Metadata Created:24.10.2019
Metadata Last Updated:24.10.2019
Subproject:B1
Funding Phase:1
Metadata Language:English
Metadata Version:V50
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Dataset Downloads:6
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